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Some useful links (a very small sample):

1. logisim
2. Ben Eater breadboard computer
3. Ben Eater in logisim,
4. MIPS in logisim
5. David A. Patterson & John L. Hennessy MIPS book
6. Code by Charles Petzold
7. What Can Be Computed by John MacCormick
8. DigiComp II